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dc.contributor.authorAkbaba, Cihat Ediz
dc.contributor.authorPolat, Adem
dc.contributor.authorGöktürk, Dilek
dc.date.accessioned2024-01-22T11:36:44Z
dc.date.available2024-01-22T11:36:44Z
dc.date.issued2023en_US
dc.identifier.citationAkbaba, C. E., Polat, A., & Göktürk, D. (2023). Tracing 2D Growth of Pancreatic Tumoroids Using the Combination of Image Processing Techniques and Mini-Opto Tomography Imaging System. Technology in Cancer Research & Treatment, 22. doi: 10.1177/15330338231164267en_US
dc.identifier.issn1533-0346 / 1533-0338
dc.identifier.urihttps://doi.org/10.1177/15330338231164267
dc.identifier.urihttps://hdl.handle.net/20.500.12428/5295
dc.description.abstractObjectives: In this study, we aimed to trace the 2D growth development of tumoroids produced with MIA PaCa-2 pancreatic cancer cells at different time points. Methods We cultured 3 different tumoroids with 0.5%, 0.8%, and 1.5% agarose concentrations and calculated the growth rate of the tumoroids with their images acquired at 9 imaging time points by mini-Opto tomography imaging system applying image processing techniques. We used the metrics contrast-to-noise ratio (CNR), peak signal-to-noise ratio (PSNR), and mean squared error (MSE) to analyze the distinguishability of the tumoroid structure from its surroundings, quantitatively. Additionally, we calculated the increase of the radius, the perimeter, and the area of 3 tumoroids over a time period. Results In the quantitative assessment, the bilateral and Gaussian filters gave the highest CNR values (ie, Gaussian filter: at each of 9 imaging time points in range of 1.715 to 15.142 for image set-1). The median filter gave the highest values in PSNR in the range of 43.108 to 47.904 for image set-2 and gave the lowest values in MSE in the range of 0.604 to 2.599 for image set-3. The areas of tumoroids with 0.5%, 0.8%, and 1.5% agarose concentrations were 1.014 mm2, 1.047 mm2, and 0.530 mm2 in the imaging time point-1 and 33.535 mm2, 4.538 mm2, and 2.017 mm2 in the imaging time point-9. The tumoroids with 0.5%, 0.8%, and 1.5% agarose concentrations grew up to times of 33.07, 4.33, and 3.80 in area size over this period, respectively. Conclusions The growth rate and the widest borders of the different tumoroids in a time interval could be detected automatically and successfully. This study that combines the image processing techniques with mini-Opto tomography imaging system ensured significant results in observing the tumoroid's growth rate and enlarging border over time, which is very critical to provide an emerging methodology in vitro cancer studies.en_US
dc.language.isoengen_US
dc.publisherSAGE Publications Inc.en_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.rights.urihttp://creativecommons.org/licenses/by-nc/3.0/us/*
dc.subjectCancer cellsen_US
dc.subjectImage processing techniquesen_US
dc.subjectImage segmentationen_US
dc.subjectMIA PaCa-2 cellsen_US
dc.subjectMini-Opto tomographyen_US
dc.subjectPancreatic canceren_US
dc.subjectTumoroiden_US
dc.subjectTumorsen_US
dc.titleTracing 2D Growth of Pancreatic Tumoroids Using the Combination of Image Processing Techniques and Mini-Opto Tomography Imaging Systemen_US
dc.typearticleen_US
dc.authorid0000-0002-5662-4141en_US
dc.relation.ispartofTechnology in Cancer Research and Treatmenten_US
dc.departmentFakülteler, Mühendislik Fakültesi, Elektrik-Elektronik Mühendisliği Bölümüen_US
dc.identifier.volume22en_US
dc.institutionauthorPolat, Adem
dc.identifier.doi10.1177/15330338231164267en_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.authorwosidAAF-6531-2019en_US
dc.authorscopusid57217796734en_US
dc.identifier.wosqualityQ3en_US
dc.identifier.wosWOS:000976269900001en_US
dc.identifier.scopus2-s2.0-85153711396en_US
dc.identifier.pmidPMID: 37098686en_US


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